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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ATAC-seq
65
snATAC-seq
26
DNase-seq
Assay category
529
DNA binding
498
Transcription
350
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
70
August, 2021
60
May, 2022
55
May, 2020
47
February, 2023
27
February, 2021
23
June, 2019
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
122
bed narrowPeak
64
xls
60
zippedFastqFolder
39
fastq
35
bigWig
26
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
12
tsv
Organism
349
Homo sapiens
Biosample type
173
primary cell
161
tissue
16
cell line
Organ
90
kidney
73
epithelium
73
pancreas
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
10
lung
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
243
AMP
97
HPAP
10
LungMap
Genome assembly (visualization)
441
GRCh38
hg19
Lab
160
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
assay_title!
RNA microarray
lab.title!
Kyle Gaulton, UCSD
assembly!
hg19
BIOSAMPLE
ASSAY
350 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 11 more…
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
15
1
lung
10
body of pancreas
2
+ See 16 more…
cell line
EndoC_BH1
16
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