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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
snATAC-seq
7
single cell RNA-seq
4
Hi-C
RNA microarray
1
ATAC-seq
Assay category
29
DNA accessibility
7
Transcription
4
3D chromatin structure
Date released
33
February, 2021
3
October, 2022
2
December, 2019
August, 2022
1
May, 2022
1
October, 2019
Available data
27
fastq
7
tsv
6
txt
5
csv
4
hic
3
bedpe bed3+
3
cool
1
bam
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
40
Homo sapiens
Biosample type
31
primary cell
6
tissue
2
in vitro differentiated cells
1
cell line
Organ
5
kidney
4
epithelium
3
pancreas
1
blood vessel
1
liver
1
musculature of body
1
vasculature
1
vein
Project
30
HPAP
10
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
30
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
269
inconsistent ontology term
39
audit script error
28
inconsistent control
1
inconsistent replicate
assay_title!
RNA microarray
month_released!
August, 2022
BIOSAMPLE
ASSAY
40 results
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snATAC-seq
single cell RNA-seq
Hi-C
ATAC-seq
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
kidney
5
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
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