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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
76
total RNA-seq
22
ChIP-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
22
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
66
February, 2021
13
December, 2017
13
February, 2018
8
August, 2021
8
February, 2023
3
May, 2021
1
January, 2018
Available data
102
bam
87
bigWig
72
tsv
27
fastq
22
bed narrowPeak
4
bed bed3
4
txt
3
bed bed3+
Organism
112
Homo sapiens
Biosample type
74
tissue
29
in vitro differentiated cells
8
cell line
1
primary cell
Organ
945
pancreas
791
liver
683
connective tissue
522
epithelium
490
adipose tissue
393
heart
352
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
96
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
1
T1D
Genome assembly (visualization)
99
hg19
95
GRCh38
1
hg18
Lab
111
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
RNA microarray
month_released!
June, 2018
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 8 more…
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
See all biosamples
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