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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
48
single cell RNA-seq
32
pCHi-C
10
Hi-C
4
ATAC-seq
Assay category
179
Transcription
10
3D chromatin structure
4
DNA accessibility
Date released
586
February, 2021
411
August, 2017
406
November, 2017
318
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
207
tsv
179
bigWig
175
bam
50
fastq
12
bedpe bed3+
10
hic
2
ibed
Organism
225
Homo sapiens
Biosample type
156
tissue
49
primary cell
8
cell line
8
in vitro differentiated cells
4
stem cell
Organ
164
pancreas
36
epithelium
7
heart
5
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
225
AMP
7
T1D
Genome assembly (visualization)
191
hg19
175
GRCh38
Lab
225
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
225 results
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total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
ATAC-seq
tissue
islet of Langerhans
120
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 11 more…
cell line
EndoC_BH1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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