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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
67
total RNA-seq
35
ChIP-seq
13
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
67
Transcription
35
DNA binding
15
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
66
February, 2021
42
October, 2019
8
February, 2023
1
February, 2020
1
May, 2021
Available data
108
bam
89
bigWig
63
tsv
35
bed narrowPeak
26
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
117
tissue
1
primary cell
Organ
946
pancreas
791
liver
683
connective tissue
523
epithelium
490
adipose tissue
353
heart
352
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
96
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
1
T1D
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
117
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
bone tissue
58
tibial nerve
5
35
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
megakaryocyte
1
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