Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
86
February, 2023
74
May, 2022
68
May, 2021
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
186
bam
186
bigWig
132
fastq
104
tsv
93
zippedFastqFolder
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
411
Homo sapiens
Biosample type
340
primary cell
64
tissue
9
cell line
2
stem cell
Organ
112
pancreas
105
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
227
HPAP
127
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
101
hg19
99
GRCh38
Lab
227
Klaus Kaestner, Upenn
123
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
7
inconsistent ontology term
3
audit script error
assay_title!
RRBS
assay_slims!
DNA accessibility
award.project!
AMP
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
415 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 36 more…
tissue
kidney
47
lung
9
islet of Langerhans
7
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download