Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
RRBS
1
small RNA-seq
Assay category
166
Transcription
77
DNA accessibility
8
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
60
February, 2021
36
February, 2023
30
June, 2019
23
July, 2019
7
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
168
tsv
118
bam
110
bigWig
77
bed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
30
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
257
Homo sapiens
Biosample type
189
tissue
60
cell line
7
primary cell
1
in vitro differentiated cells
Organ
726
pancreas
530
connective tissue
418
adipose tissue
389
epithelium
298
kidney
257
heart
237
liver
159
bone element
133
vasculature
131
blood vessel
107
artery
66
brain
56
limb
55
eye
52
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
257
AMP
Genome assembly (visualization)
153
GRCh38
112
hg19
Lab
257
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
ChIP-seq
BIOSAMPLE
ASSAY
257 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
tissue
coronary artery
1
36
2
heart left ventricle
18
3
2
3
4
1
1
heart
1
4
18
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
cardiac fibroblast
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download