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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
88
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
88
DNA binding
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
5
February, 2023
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
110
Homo sapiens
Biosample type
100
primary cell
7
cell line
3
tissue
Organ
4
pancreas
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2239
AMP
135
HPAP
110
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
106
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
RRBS
total RNA-seq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
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cell line
EndoC_BH1
2
3
2
tissue
islet of Langerhans
2
thymus
1
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