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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
7
ChIP-seq
4
single cell RNA-seq
1
total RNA-seq
Assay category
11
DNA accessibility
7
DNA binding
5
Transcription
Target of assay
6
control
1
recombinant protein
1
transcription factor
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
133
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
July, 2019
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
88
fastq
87
bam
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
23
Homo sapiens
Biosample type
18
tissue
4
cell line
1
primary cell
Organ
14
kidney
3
blood
3
bodily fluid
3
spleen
1
adipose tissue
1
connective tissue
1
liver
Project
23
AMP
Genome assembly (visualization)
12
GRCh38
1
hg19
Lab
14
Katalin Susztak, Upenn
9
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_title!
RRBS
files.file_type!
bigWig
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
tissue
kidney
11
3
spleen
3
adipose tissue
1
cell line
GM12878
3
HepG2
1
primary cell
pancreatic cell
1
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