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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
1
Hi-C
RRBS
1
WGBS
Assay category
69
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
64
control
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
13
December, 2017
9
August, 2017
1
December, 2018
1
November, 2018
Available data
681
bam
bigWig
464
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
hdf5
1
vcf
Organism
71
Homo sapiens
Biosample type
49
cell line
21
tissue
1
in vitro differentiated cells
Organ
114
pancreas
74
epithelium
71
liver
27
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
3
brain
Project
71
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
71
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_title!
RRBS
files.file_type!
bigWig
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
Hi-C
WGBS
cell line
HepG2
48
1
tissue
liver
17
1
right lobe of liver
3
in vitro differentiated cells
hepatocyte
1
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