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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
32
total RNA-seq
9
Hi-C
RRBS
4
WGBS
4
pCHi-C
2
ATAC-seq
2
STARR-seq
2
single cell RNA-seq
1
DNase-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
132
DNA binding
34
Transcription
9
3D chromatin structure
4
DNA accessibility
4
DNA methylation
1
DNA sequencing
Target of assay
101
control
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
44
August, 2017
24
May, 2020
22
May, 2022
18
August, 2021
13
December, 2017
5
July, 2019
5
March, 2020
3
February, 2020
3
February, 2021
2
June, 2019
1
December, 2018
1
May, 2019
1
November, 2018
1
October, 2019
Available data
738
bam
bigWig
501
bed narrowPeak
464
fastq
405
bigBed narrowPeak
183
tsv
109
bed broadPeak
101
tagAlign
96
bigBed broadPeak
47
bed bed3+
4
bedpe bed3+
4
hic
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
csv
1
hdf5
1
txt
1
vcf
Organism
190
Homo sapiens
Biosample type
116
tissue
69
cell line
4
primary cell
1
in vitro differentiated cells
Organ
321
pancreas
219
kidney
217
epithelium
167
heart
167
liver
113
connective tissue
101
bone element
80
blood vessel
80
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
31
limb
23
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
190
AMP
Genome assembly (visualization)
9
hg19
3
GRCh38
Lab
153
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_title!
RRBS
files.file_type!
bigWig
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
ATAC-seq
STARR-seq
single cell RNA-seq
DNase-seq
snATAC-seq
whole genome sequencing assay
tissue
liver
63
20
1
3
1
1
skeletal muscle tissue
9
1
1
right lobe of liver
3
1
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
+ See 2 more…
cell line
HepG2
52
9
2
2
1
2
1
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
skeletal muscle cell
1
skeletal muscle satellite cell
1
in vitro differentiated cells
hepatocyte
1
See all biosamples
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