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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
24
ChIP-seq
4
pCHi-C
3
Hi-C
3
total RNA-seq
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
24
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
4
histone
4
histone modification
4
narrow histone mark
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
March, 2020
6
May, 2019
5
October, 2019
3
February, 2020
2
July, 2019
2
June, 2019
Available data
bigWig
211
bam
191
bed narrowPeak
169
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
172
Homo sapiens
Biosample type
160
tissue
10
cell line
2
primary cell
Organ
321
pancreas
219
kidney
217
epithelium
167
heart
167
liver
113
connective tissue
101
bone element
80
blood vessel
80
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
31
limb
23
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
172
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
172
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
files.file_type!
bigWig
BIOSAMPLE
ASSAY
172 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
total RNA-seq
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
See all biosamples
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