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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
188
ATAC-seq
97
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
276
DNA accessibility
182
Transcription
42
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
58
August, 2017
55
June, 2019
46
September, 2018
41
February, 2021
32
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
4
July, 2019
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
408
fastq
295
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
806
Homo sapiens
Biosample type
1689
tissue
806
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
284
epithelium
238
pancreas
34
vasculature
29
blood vessel
27
kidney
23
connective tissue
22
vein
17
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
8
liver
4
eye
1
bone element
1
bone marrow
Project
379
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
366
hg19
284
GRCh38
Lab
344
AMP-T2D consortium
318
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
files.file_type!
tsv
csv
BIOSAMPLE
ASSAY
806 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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