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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
41
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA binding
275
DNA accessibility
184
Transcription
42
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
58
August, 2017
51
June, 2019
47
September, 2018
41
February, 2021
32
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
4
July, 2019
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
610
bigWig
605
bam
408
fastq
292
bed narrowPeak
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
804
Homo sapiens
Biosample type
1639
tissue
804
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
284
epithelium
238
pancreas
34
vasculature
29
blood vessel
27
kidney
23
connective tissue
22
vein
17
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
8
liver
eye
1
bone element
1
bone marrow
Project
377
AMP
318
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
363
hg19
281
GRCh38
Lab
342
AMP-T2D consortium
318
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
files.file_type!
tsv
organ_slims!
eye
BIOSAMPLE
ASSAY
804 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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