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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
47
ATAC-seq
30
DNase-seq
6
WGBS
Assay category
113
DNA binding
77
DNA accessibility
6
DNA methylation
Target of assay
96
histone
96
histone modification
57
broad histone mark
39
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
46
April, 2019
40
May, 2024
35
February, 2023
33
June, 2019
15
May, 2019
12
February, 2021
10
July, 2019
5
October, 2019
Available data
223
bigWig
191
bam
190
bed narrowPeak
94
bigBed narrowPeak
tsv
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
Organism
196
Homo sapiens
Biosample type
178
tissue
12
cell line
6
primary cell
Organ
369
liver
229
pancreas
205
brain
196
heart
193
kidney
148
epithelium
133
vasculature
129
blood vessel
92
connective tissue
92
limb
74
artery
54
blood
54
bodily fluid
47
musculature of body
27
nerve
26
adipose tissue
18
ureter
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
196
AMP
Genome assembly (visualization)
196
GRCh38
116
hg19
Lab
156
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
RRBS
files.file_type!
tsv
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
28
2
3
2
heart
12
18
1
heart right ventricle
11
1
2
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cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
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