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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
RRBS
1
single cell RNA-seq
Assay category
134
DNA binding
77
DNA accessibility
8
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
12
July, 2019
6
October, 2019
2
March, 2020
Available data
224
bigWig
211
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
223
Homo sapiens
Biosample type
201
tissue
14
cell line
8
primary cell
Organ
615
liver
527
pancreas
362
epithelium
326
kidney
258
brain
223
heart
205
connective tissue
167
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
83
artery
82
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
223
AMP
Genome assembly (visualization)
196
GRCh38
116
hg19
Lab
183
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_title!
RRBS
files.file_type!
tsv
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
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