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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
30
DNase-seq
12
ATAC-seq
8
WGBS
3
Hi-C
RRBS
Assay category
134
DNA binding
42
DNA accessibility
8
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
12
July, 2019
6
October, 2019
2
March, 2020
Available data
224
bigWig
211
bam
tsv
156
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
187
Homo sapiens
Biosample type
165
tissue
14
cell line
8
primary cell
Organ
615
liver
471
pancreas
326
kidney
312
epithelium
257
brain
191
connective tissue
187
heart
132
vasculature
127
blood vessel
115
limb
93
bone element
89
adipose tissue
82
musculature of body
69
blood
69
bodily fluid
48
artery
38
nerve
28
eye
24
spleen
23
embryo
22
vein
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
187
AMP
Genome assembly (visualization)
161
GRCh38
116
hg19
Lab
147
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_title!
RRBS
files.file_type!
tsv
month_released!
February, 2023
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
tissue
heart left ventricle
35
3
2
4
1
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
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