Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
RRBS
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
6
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
10
August, 2017
5
July, 2019
3
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tsv
7
tagAlign
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
62
Homo sapiens
Biosample type
55
tissue
7
primary cell
Organ
573
liver
449
pancreas
318
epithelium
311
kidney
188
brain
166
heart
161
connective tissue
122
vasculature
117
blood vessel
101
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
62
musculature of body
55
eye
22
nerve
20
spleen
19
embryo
19
lung
18
ureter
16
skeleton
13
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
62
AMP
Genome assembly (visualization)
48
hg19
39
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assay_title!
RRBS
files.file_type!
tsv
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
62 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
3
1
skeletal muscle tissue
10
1
1
1
gastrocnemius medialis
4
psoas muscle
2
+ See 2 more…
primary cell
skeletal muscle satellite cell
4
skeletal muscle cell
1
2
See all biosamples
Download