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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
26
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
26
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
8
histone
8
histone modification
5
RNA binding protein
4
broad histone mark
4
narrow histone mark
1
control
Date released
386
February, 2021
24
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
432
Homo sapiens
Biosample type
430
tissue
2
primary cell
Organ
666
liver
628
pancreas
591
connective tissue
432
adipose tissue
303
epithelium
258
brain
226
heart
157
vasculature
152
blood vessel
131
kidney
91
limb
87
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
432
AMP
Genome assembly (visualization)
423
hg19
422
GRCh38
Lab
432
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
RRBS
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
subcutaneous abdominal adipose tissue
8
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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