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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
4
ATAC-seq
3
small RNA-seq
2
ChIP-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
6
DNA accessibility
2
DNA binding
2
DNA methylation
Target of assay
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
12
July, 2019
5
August, 2017
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
408
Homo sapiens
Biosample type
406
tissue
2
primary cell
Organ
604
pancreas
530
connective tissue
408
adipose tissue
292
epithelium
289
liver
219
brain
207
heart
146
vasculature
142
blood vessel
122
kidney
91
limb
80
artery
68
musculature of body
58
bone element
31
nerve
26
embryo
18
ureter
15
vein
10
spleen
5
eye
4
blood
4
bodily fluid
1
pericardium
1
pituitary gland
Project
408
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
408
AMP-T2D consortium
assay_title!
RRBS
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
408 results
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Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
ChIP-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
1
2
omental fat pad
4
1
1
2
subcutaneous adipose tissue
6
1
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell of adipose
1
1
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