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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
4
Hi-C
Assay category
100
DNA binding
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
2
control
Date released
84
May, 2021
12
August, 2017
4
August, 2021
3
October, 2022
1
March, 2020
Available data
613
bigWig
609
bam
408
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
104
Homo sapiens
Biosample type
248
tissue
104
primary cell
47
in vitro differentiated cells
22
cell line
Organ
8
epithelium
4
liver
3
pancreas
1
blood vessel
1
vasculature
1
vein
Project
84
T1D
17
AMP
3
HPAP
Genome assembly (visualization)
103
hg19
98
GRCh38
Lab
84
Kyle Gaulton, UCSD
17
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent assembly
assay_title!
RRBS
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
Hi-C
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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