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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1478
total RNA-seq
456
ATAC-seq
358
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
62
snATAC-seq
57
pCHi-C
33
Hi-C
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
62
DNA accessibility
Date released
27
February, 2021
22
May, 2022
January, 2021
10
April, 2020
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
61
Homo sapiens
Biosample type
48
primary cell
14
tissue
Organ
10
lung
3
pancreas
1
musculature of body
Project
48
HPAP
10
LungMap
2
AMP
2
T1D
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
Katalin Susztak, Upenn
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
29
audit script error
assay_title!
RRBS
lab.title!
Katalin Susztak, Upenn
month_released!
January, 2021
BIOSAMPLE
ASSAY
62 results
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snATAC-seq
primary cell
Langerhans cell
48
tissue
lung
10
islet of Langerhans
3
skeletal muscle tissue
1
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