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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA binding
193
Transcription
23
DNA accessibility
5
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
108
control
68
histone modification
67
histone
46
narrow histone mark
24
transcription factor
21
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
47
August, 2017
40
May, 2022
35
August, 2021
13
December, 2017
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
622
bigWig
464
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
hdf5
1
vcf
Organism
431
Homo sapiens
Biosample type
311
tissue
108
cell line
11
primary cell
1
in vitro differentiated cells
Organ
852
pancreas
655
connective tissue
481
adipose tissue
442
epithelium
431
liver
297
heart
246
kidney
159
bone element
157
brain
152
vasculature
151
blood vessel
116
artery
54
eye
44
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
431
AMP
Genome assembly (visualization)
269
hg19
205
GRCh38
Lab
360
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
RRBS
lab.title!
Stephen Parker, UMich
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
431 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
107
167
20
3
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
85
14
1
1
2
2
2
1
primary cell
hepatocyte
4
5
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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