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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
575
total RNA-seq
84
RNA microarray
33
ChIP-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
593
Transcription
49
DNA accessibility
33
DNA binding
6
DNA methylation
Target of assay
19
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
93
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
602
bam
589
tsv
577
bigWig
89
txt
75
fastq
44
bed narrowPeak
21
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
770
Homo sapiens
Biosample type
577
tissue
119
cell line
48
primary cell
26
in vitro differentiated cells
Organ
457
connective tissue
388
adipose tissue
150
bone element
69
blood vessel
69
heart
69
vasculature
68
artery
33
pancreas
32
epithelium
18
blood
18
bodily fluid
12
brain
9
limb
9
liver
8
kidney
8
skeleton
7
spleen
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
725
AMP
45
HPAP
Genome assembly (visualization)
600
hg19
594
GRCh38
Lab
725
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
129
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
RRBS
BIOSAMPLE
ASSAY
770 results
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Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 38 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
GM12878
18
HepG2
5
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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