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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
120
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
122
August, 2017
120
May, 2019
118
July, 2018
93
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
121
bam
97
bed narrowPeak
97
bigBed narrowPeak
97
bigWig
1
bed broadPeak
1
bedpe
fastq
1
hic
Organism
124
Homo sapiens
Biosample type
119
tissue
5
primary cell
Organ
50
blood vessel
50
vasculature
28
brain
21
heart
7
limb
7
musculature of body
6
pancreas
5
artery
5
epithelium
5
kidney
Project
124
AMP
Genome assembly (visualization)
100
hg19
98
GRCh38
Lab
120
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
assay_title!
RRBS
files.file_type!
fastq
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
ATAC-seq
Hi-C
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 7 more…
primary cell
kidney epithelial cell
5
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