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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
844
total RNA-seq
529
ChIP-seq
161
DNase-seq
110
ATAC-seq
16
small RNA-seq
11
Hi-C
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
860
Transcription
529
DNA binding
276
DNA accessibility
11
3D chromatin structure
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
386
February, 2021
177
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
54
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
29
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1589
bigWig
1582
bam
860
tsv
769
bed narrowPeak
493
bigBed narrowPeak
291
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bedpe bed3+
1
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1670
Homo sapiens
Biosample type
1676
tissue
618
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
411
pancreas
267
liver
142
brain
112
heart
96
limb
91
kidney
70
blood vessel
bone element
70
vasculature
59
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pituitary gland
Project
1674
AMP
2
T1D
Genome assembly (visualization)
1793
GRCh38
1676
hg19
Lab
1633
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
organ_slims!
bone element
BIOSAMPLE
ASSAY
1676 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
42
2
1
liver
147
83
2
20
1
1
heart left ventricle
3
29
3
2
1
body of pancreas
2
26
2
4
2
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