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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
31
ATAC-seq
22
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
38
Transcription
32
DNA accessibility
22
DNA binding
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
narrow histone mark
8
control
6
broad histone mark
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
26
February, 2021
26
May, 2021
16
November, 2019
15
February, 2023
6
November, 2020
5
March, 2020
4
December, 2017
2
August, 2021
2
October, 2019
1
December, 2019
Available data
60
bam
56
bigWig
40
tsv
31
bed narrowPeak
4
fastq
3
tagAlign
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
102
Homo sapiens
Biosample type
primary cell
79
cell line
15
tissue
9
in vitro differentiated cells
Organ
liver
645
connective tissue
598
pancreas
489
adipose tissue
379
heart
317
kidney
264
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
78
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
4
T1D
Genome assembly (visualization)
70
hg19
55
GRCh38
Lab
97
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
assay_title!
RRBS
organ_slims!
liver
biosample_type!
primary cell
BIOSAMPLE
ASSAY
103 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
33
19
15
6
2
1
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
in vitro differentiated cells
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
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