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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
456
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
244
transcription factor
115
histone
115
histone modification
94
control
66
recombinant protein
65
narrow histone mark
50
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
217
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
89
July, 2019
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
675
bam
594
bigWig
340
bed narrowPeak
324
fastq
312
bigBed narrowPeak
189
tsv
128
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
747
Homo sapiens
Biosample type
316
cell line
275
tissue
156
primary cell
Organ
509
liver
91
brain
6
epithelium
6
vasculature
3
blood vessel
Project
702
AMP
45
T1D
Genome assembly (visualization)
541
hg19
487
GRCh38
Lab
702
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
RRBS
organ_slims!
pancreas
BIOSAMPLE
ASSAY
747 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
315
1
tissue
liver
50
143
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
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