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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
37
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
49
DNA accessibility
37
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
30
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
101
bam
84
bigWig
73
bed narrowPeak
59
tsv
24
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
145
Homo sapiens
Biosample type
77
tissue
66
cell line
2
primary cell
Organ
935
pancreas
731
liver
673
connective tissue
510
epithelium
486
adipose tissue
380
heart
347
kidney
281
brain
230
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
91
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
145
AMP
Genome assembly (visualization)
127
GRCh38
92
hg19
Lab
145
AMP-T2D consortium
assay_title!
RRBS
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
145 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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