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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
53
total RNA-seq
19
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
Hi-C
1
RNA microarray
RRBS
1
small RNA-seq
Assay category
118
Transcription
81
DNA accessibility
19
DNA binding
1
3D chromatin structure
Target of assay
9
control
8
transcription factor
7
recombinant protein
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
130
August, 2021
47
September, 2023
17
October, 2019
14
May, 2023
8
February, 2021
5
April, 2019
2
December, 2019
2
July, 2019
2
March, 2020
Available data
160
bed narrowPeak
111
bam
101
bigWig
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
hic
Organism
227
Homo sapiens
Biosample type
210
tissue
17
cell line
Organ
853
pancreas
655
connective tissue
481
adipose tissue
epithelium
431
liver
297
heart
246
kidney
159
bone element
157
brain
152
vasculature
151
blood vessel
116
artery
54
eye
44
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
180
AMP
47
KPMP
Genome assembly (visualization)
89
GRCh38
15
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
36
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
6
audit script error
assay_title!
RRBS
organ_slims!
epithelium
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
227 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
Hi-C
RNA microarray
small RNA-seq
tissue
kidney
75
64
49
9
6
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
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