Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
16
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA binding
16
DNA accessibility
11
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
70
control
transcription factor
4
recombinant protein
3
RNA binding protein
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
43
November, 2017
21
August, 2021
16
May, 2021
10
October, 2019
6
February, 2023
6
November, 2020
4
March, 2020
4
November, 2018
3
February, 2021
3
January, 2019
2
March, 2023
2
November, 2019
1
December, 2018
1
May, 2020
1
October, 2022
Available data
65
bam
51
fastq
14
tsv
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
txt
1
vcf
Organism
119
Homo sapiens
Biosample type
1014
tissue
460
primary cell
123
cell line
85
in vitro differentiated cells
7
stem cell
Organ
62
liver
34
pancreas
27
epithelium
7
kidney
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
116
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
155
GRCh38
Lab
91
AMP-T2D consortium
19
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
32
inconsistent ontology term
assay_title!
RRBS
target.investigated_as!
transcription factor
assembly!
hg19
BIOSAMPLE
ASSAY
123 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
47
9
2
1
1
1
1
EndoC_BH1
2
16
6
3
2
2
1
Panc1
7
GM12878
6
EndoC-BH1
1
1
+ See 11 more…
See all biosamples
Download