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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
67
total RNA-seq
6
snATAC-seq
5
ChIP-seq
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
173
Transcription
6
DNA accessibility
5
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
Date released
666
February, 2021
314
May, 2020
244
August, 2017
191
August, 2021
168
July, 2018
162
May, 2022
139
May, 2021
126
February, 2023
119
October, 2019
101
July, 2019
93
November, 2017
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
May, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
13
December, 2017
11
October, 2017
9
January, 2019
8
December, 2019
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
116
tsv
bed narrowPeak
64
xls
57
txt
25
bigWig
12
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
190
Homo sapiens
Biosample type
165
tissue
25
cell line
in vitro differentiated cells
1
primary cell
Organ
92
heart
64
kidney
16
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
191
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
110
AMP-T2D consortium
64
Katalin Susztak, Upenn
17
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
STARR-seq
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
191 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
1
1
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
1
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