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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
26
ATAC-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
83
DNA binding
36
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
Transcription
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
8
control
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
191
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
146
bam
111
bigWig
110
bed narrowPeak
88
fastq
73
bigBed narrowPeak
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
129
Homo sapiens
Biosample type
76
cell line
47
tissue
5
in vitro differentiated cells
1
primary cell
Organ
53
liver
42
pancreas
15
blood
15
bodily fluid
15
epithelium
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
129
AMP
Genome assembly (visualization)
116
GRCh38
110
hg19
Lab
129
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
STARR-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
EndoC_BH1
13
1
1
GM12878
15
tissue
islet of Langerhans
19
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
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in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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