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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
69
DNA binding
10
DNA accessibility
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
6
histone
6
histone modification
5
broad histone mark
3
other context
3
other post-translational modification
1
narrow histone mark
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
105
fastq
102
bam
94
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
79
Homo sapiens
Biosample type
56
cell line
23
tissue
Organ
51
liver
12
blood
12
bodily fluid
8
brain
4
spleen
3
pancreas
1
adipose tissue
1
connective tissue
Project
79
AMP
Genome assembly (visualization)
78
GRCh38
77
hg19
Lab
79
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
44
GM12878
12
tissue
brain
6
2
liver
4
2
spleen
3
1
body of pancreas
2
omental fat pad
1
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