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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
69
total RNA-seq
59
ChIP-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
69
Transcription
59
DNA binding
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
150
February, 2021
69
October, 2019
32
June, 2019
8
February, 2023
May, 2019
5
July, 2019
3
February, 2020
1
May, 2021
Available data
167
bam
143
bigWig
88
bed narrowPeak
88
txt
78
bigBed narrowPeak
65
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
268
Homo sapiens
Biosample type
267
tissue
1
primary cell
Organ
944
pancreas
789
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
347
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
267
AMP
1
T1D
Genome assembly (visualization)
154
hg19
151
GRCh38
Lab
267
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
assay_title!
STARR-seq
month_released!
May, 2019
BIOSAMPLE
ASSAY
268 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
2
1
tibial artery
1
23
2
1
muscle of arm
17
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primary cell
megakaryocyte
1
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