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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
Assay category
180
Transcription
82
DNA accessibility
32
DNA binding
3
3D chromatin structure
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
307
October, 2019
302
August, 2021
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
49
bam
36
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
Organism
301
Homo sapiens
Biosample type
229
tissue
42
in vitro differentiated cells
27
cell line
4
primary cell
Organ
128
kidney
92
heart
21
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
302
AMP
Genome assembly (visualization)
105
GRCh38
49
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
19
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
STARR-seq
assay_slims!
DNA sequencing
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
302 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
7
1
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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