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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
93
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
42
transcription factor
30
histone
30
histone modification
21
control
15
broad histone mark
15
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
314
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
94
bam
94
fastq
72
bed narrowPeak
72
bigWig
50
bigBed narrowPeak
15
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
98
Homo sapiens
Biosample type
53
tissue
42
in vitro differentiated cells
3
stem cell
Organ
63
liver
19
epithelium
12
embryo
5
pancreas
Project
98
AMP
Genome assembly (visualization)
80
hg19
79
GRCh38
Lab
93
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
STARR-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
liver
38
right lobe of liver
10
islet of Langerhans
4
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
8
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
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