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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
44
DNA binding
8
Transcription
Target of assay
21
control
14
histone
14
histone modification
9
narrow histone mark
9
transcription factor
5
broad histone mark
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
314
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
99
bam
94
fastq
77
bigWig
72
bed narrowPeak
bigBed narrowPeak
15
bed bed3+
9
tsv
Organism
54
Homo sapiens
Biosample type
31
in vitro differentiated cells
15
tissue
5
primary cell
3
stem cell
Organ
18
liver
13
embryo
11
epithelium
3
kidney
Project
54
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
54
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
STARR-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
in vitro differentiated cells
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
Hepatic endoderm
4
+ See 2 more…
tissue
liver
9
right lobe of liver
3
kidney
1
kidney interstitium
1
renal glomerulus
1
primary cell
hepatocyte
5
stem cell
hESC
3
See all biosamples
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