Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
34
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
75
DNA binding
34
Transcription
21
DNA accessibility
1
3D chromatin structure
Target of assay
52
transcription factor
13
histone
13
histone modification
11
RNA binding protein
11
control
10
chromatin remodeller
7
narrow histone mark
6
broad histone mark
3
nucleotide modification
Date released
27
December, 2018
26
February, 2021
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
1
January, 2018
Available data
111
bam
105
bigWig
69
bed narrowPeak
60
fastq
55
bigBed narrowPeak
35
tsv
1
bedpe bed3+
1
hic
Organism
139
Homo sapiens
Biosample type
414
primary cell
140
cell line
24
in vitro differentiated cells
15
tissue
Organ
399
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
17
kidney
8
embryo
1
mammary gland
Project
136
AMP
4
T1D
Genome assembly (visualization)
107
hg19
103
GRCh38
Lab
134
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
1
inconsistent control
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
140 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
15
33
19
6
2
1
1
GM12878
60
1
glomerular visceral epithelial cell
1
1
Download