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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
29
ChIP-seq
8
snATAC-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
51
DNA accessibility
29
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
26
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
8
January, 2021
6
August, 2021
3
February, 2020
3
January, 2019
3
March, 2020
3
November, 2018
1
July, 2019
Available data
240
bam
bigWig
183
bed narrowPeak
133
bigBed narrowPeak
68
tsv
63
fastq
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
94
Homo sapiens
Biosample type
63
tissue
16
cell line
15
primary cell
Organ
323
pancreas
223
epithelium
221
kidney
169
heart
167
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
8
T1D
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
86
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
STARR-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
GM12878
6
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
5
2
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