Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
8
snATAC-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
Assay category
24
DNA binding
14
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
23
control
1
histone
1
histone modification
1
narrow histone mark
Date released
17
October, 2019
8
January, 2021
6
February, 2021
4
July, 2019
3
February, 2020
3
January, 2019
3
November, 2018
1
May, 2019
Available data
174
bam
146
bed narrowPeak
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
45
Homo sapiens
Biosample type
31
tissue
8
primary cell
6
cell line
Organ
323
pancreas
223
epithelium
221
kidney
169
heart
167
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
8
T1D
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
37
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
STARR-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
45 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 6 more…
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
6
See all biosamples
Download