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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
531
ATAC-seq
212
DNase-seq
84
snATAC-seq
WGBS
21
RRBS
5
FAIRE-seq
1
DNAme array
Assay category
1918
Transcription
1871
DNA binding
832
DNA accessibility
34
3D chromatin structure
22
DNA methylation
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
35
May, 2021
33
October, 2019
26
November, 2019
23
July, 2019
17
August, 2017
16
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
106
fastq
64
xls
60
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
853
Homo sapiens
Biosample type
481
tissue
299
primary cell
43
in vitro differentiated cells
31
cell line
Organ
175
pancreas
167
kidney
129
epithelium
79
heart
59
vasculature
56
blood vessel
49
artery
44
limb
40
musculature of body
39
brain
35
connective tissue
33
eye
31
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pericardium
1
pituitary gland
1
skin of body
Project
718
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
472
hg19
441
GRCh38
Lab
584
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
48
inconsistent ontology term
29
audit script error
1
inconsistent replicate
assay_title!
WGBS
BIOSAMPLE
ASSAY
854 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
RRBS
FAIRE-seq
DNAme array
tissue
kidney
75
13
6
1
1
islet of Langerhans
68
1
7
1
1
coronary artery
36
2
liver
20
2
1
heart
18
+ See 61 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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