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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
9
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
9
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
34
bigWig
27
bed narrowPeak
23
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
62
Homo sapiens
Biosample type
49
tissue
13
primary cell
Organ
887
pancreas
780
liver
669
connective tissue
483
adipose tissue
458
epithelium
315
heart
273
kidney
254
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
37
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
40
hg19
19
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
WGBS
DNase-seq
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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