Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
46
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
66
Transcription
52
DNA accessibility
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
6
August, 2021
6
July, 2019
4
June, 2019
3
February, 2020
3
March, 2020
Available data
153
bam
127
bigWig
113
bed narrowPeak
67
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bedpe bed3+
1
hic
Organism
199
Homo sapiens
Biosample type
131
tissue
66
cell line
2
primary cell
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
199
AMP
Genome assembly (visualization)
170
GRCh38
136
hg19
Lab
199
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
MPRA
organ_slims!
epithelium
BIOSAMPLE
ASSAY
199 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download