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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
784
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
784
DNA binding
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
169
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
190
October, 2019
176
August, 2017
94
May, 2019
82
November, 2017
74
October, 2018
50
May, 2020
48
December, 2017
23
April, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
640
bam
508
bigWig
488
bed narrowPeak
316
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
777
Homo sapiens
Biosample type
784
tissue
478
cell line
274
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
782
AMP
2
T1D
Genome assembly (visualization)
484
GRCh38
462
hg19
Lab
784
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
organ_slims!
heart
BIOSAMPLE
ASSAY
784 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
tibial nerve
35
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