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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
51
ATAC-seq
WGBS
21
snATAC-seq
Assay category
72
DNA accessibility
52
Transcription
Date released
93
May, 2022
19
September, 2020
10
February, 2023
2
February, 2021
Available data
3374
bam
3152
bigWig
1817
bed narrowPeak
1585
tsv
1314
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
155
txt
112
zippedFastqFolder
64
xls
20
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
124
Homo sapiens
Biosample type
113
primary cell
5
in vitro differentiated cells
5
tissue
1
cell line
Organ
39
epithelium
39
pancreas
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
112
HPAP
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
112
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_title!
WGBS
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
124 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
osteoblast
1
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
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