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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
49
ATAC-seq
WGBS
16
pCHi-C
4
Hi-C
Assay category
273
Transcription
105
DNA accessibility
84
DNA binding
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
93
May, 2022
76
February, 2023
59
September, 2020
45
May, 2020
39
February, 2021
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
190
bigWig
180
bam
163
fastq
112
zippedFastqFolder
96
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
482
Homo sapiens
Biosample type
482
primary cell
97
tissue
11
cell line
2
stem cell
Organ
105
epithelium
105
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
191
GRCh38
183
hg19
Lab
277
Klaus Kaestner, Upenn
204
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
assay_title!
WGBS
award.project!
AMP
BIOSAMPLE
ASSAY
482 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
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