Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
88
ChIP-seq
85
single cell RNA-seq
66
snATAC-seq
60
ATAC-seq
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
282
Transcription
126
DNA accessibility
88
DNA binding
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
99
February, 2023
93
May, 2022
59
September, 2020
45
May, 2020
39
February, 2021
16
January, 2021
7
August, 2020
7
March, 2020
3
October, 2022
Available data
196
bigWig
186
bam
163
fastq
112
zippedFastqFolder
98
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
521
Homo sapiens
Biosample type
481
primary cell
31
tissue
9
cell line
Organ
139
pancreas
109
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4224
AMP
277
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
277
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
30
audit script error
9
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
521 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 36 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
See all biosamples
Download