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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
21
total RNA-seq
WGBS
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
33
Transcription
23
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
14
August, 2017
14
September, 2018
13
May, 2022
10
February, 2023
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
56
fastq
42
bam
39
bigWig
22
tsv
14
bed narrowPeak
13
zippedFastqFolder
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
70
Homo sapiens
Biosample type
70
primary cell
Organ
70
epithelium
70
pancreas
Project
42
AMP
28
HPAP
Genome assembly (visualization)
39
GRCh38
37
hg19
Lab
42
AMP-T2D consortium
28
Klaus Kaestner, Upenn
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
assay_title!
WGBS
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
23
21
13
12
1
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