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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA accessibility
274
DNA binding
184
Transcription
11
DNA methylation
10
3D chromatin structure
Target of assay
232
histone
232
histone modification
122
broad histone mark
110
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
102
May, 2020
93
May, 2022
76
February, 2023
59
September, 2020
55
June, 2019
54
August, 2017
47
September, 2018
41
February, 2021
32
October, 2019
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
608
bigWig
604
bam
398
fastq
290
bed narrowPeak
tsv
112
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
772
Homo sapiens
Biosample type
1668
tissue
772
primary cell
516
cell line
246
in vitro differentiated cells
4
stem cell
Organ
245
epithelium
193
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
386
AMP
277
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
371
hg19
279
GRCh38
Lab
351
AMP-T2D consortium
277
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
audit.WARNING.category!
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
772 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
1
pancreatic alpha cell
11
35
42
1
pancreatic beta cell
11
23
11
1
exocrine cell
39
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